PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_8255g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 489aa    MW: 55866.3 Da    PI: 8.7466
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_8255g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.92.5e-15275317855
                   HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +ErrRR++iN +f  Lr+++P       +K +K +iL +A+eY+k+Lq
  MA_8255g0010 275 AERRRRNKINRKFKILRSIIPFV-----TKTNKESILGEAIEYLKHLQ 317
                   7*********************8.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.2E-2819147IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.18267316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-16273334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-15273322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-16274331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-12275317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MASNRSDLTT IHGRNIRLLL QAVVRSTQWT YSIFWRFSPS KGLLVWREGF YNGDVERSFQ  60
LRELFHSLKS EEEINQPSSK QCVALSTEDL TDTDWFYLFS MSFDFAPAKC LPGRALANRY  120
PVWLSRANEV EARVFSRALL AKSAGIQVPE DPGLIEHVKS FFLDDAQQVI TSETSSSQIS  180
SDFTAAEDFI QTSGSIESNM SEDITTGSPH GQKRRNCGWS EYCKGGAFSK WIEKGNPVMR  240
KEPPLASSQS RLKNKLRQGE EDSDLTDVNR DSVLAERRRR NKINRKFKIL RSIIPFVTKT  300
NKESILGEAI EYLKHLQRRV LELESHKKQT EVDHNGFQEQ NPIDGAIIDK QDEELSDEKH  360
FSRVKKLRDA NDQLKSLRMD KRKVRVVEGS ATSPMETGEG SMAEIEVSIN DEKALLQLKC  420
CWKKGLLLQI LQTLSSFHLE IYESQSSRVQ HNYFVATIKA IVIQQVGQTR NGQRETIARV  480
KEAIQRVIL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1098120.0BT109812.1 Picea glauca clone GQ03212_K19 mRNA sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5571678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.13e-40bHLH family protein